Crop Genebank Knowledge Base

Cultural practices for characterization of wild rice

Contributors to this page: T.T. Chang Genetic Resources Centre-IRRI, Los Baños, Philippines (Ruaraidh Sackville Hamilton, Ken McNally, Flora de Guzman, Renato Reaño, Soccie Almazan, Adelaida Alcantara, Elizabeth Naredo); WARDA, Cotonou, Benin (Ines Sánchez); UPLB-University of the Philippines at Los Baños (Teresita Borromeo).

Wild rice is best characterized during the seed regeneration process. So the following cultural practices are the same as the regeneration guidelines of wild rice.

Choice of environment and planting season

Climatic conditions

Preparation for regeneration

When to regenerate

The frequency of regeneration is determined by the quantity of seeds stocks left at the genebank.

The selection of material for planting depends upon the available space in the screen house facility as space is usualy a limiting factor.  

• When stocks are insufficient.
• When viability reachs low or zero values.
• When seed samples are infected.
• When morphological characterization is scheduled.
• When there are small seed quantities from newly received samples.
• When there are highly heterogenous samples.

Propagation method

• Wild taxa are readily propagated by seeds.
• Some species like O. schlechteri are maintaned asexually through its vegetative stolons.
• O. longistaminata is maintained asexually with its rhizomes.
• Other perennial species can also be propagated by separating tillers of its vegetative crown. 

Breeding system

• Rice is self-pollinated but some wild species have some degree of out-crossing.

Isolation

• Artificial barriers like net bags or glassine bags should be used to control inter-accession pollination.
• Net fencing using net curtains should be constructed to separate species like O. longistaminata.
• Pots should be planted with alternating species of different complexes.

Pre-treatments

Wild species are known to have stronger dormancy than the cultivated species. They may require one or a combination of dormancy breaking treatments including heat treatment, dehulling, exposure to alternating temperatures and, in some cases, chemical treatments.

Heat treatment

• In most species, heat treatment at 50°C for 10-14 days, followed by acclimatization at room temperature for 5-7 days is done before hull removal to promote germination of newly harvested seeds.
• If seeds are withdrawn from storage facility, allow 2-3 days for the seeds to adjust to room temperature before applying heat treatment.
• For species belonging to O. sativa complex, exposure to alternating temperatures of 45ºC and 30ºC (45/30) is generally effective in breaking dormancy. It is recommended, however, that the seeds be transferred to 30ºC after radicle emergence to achieve maximum seedling growth.

Dehulling

• Seed hull removal is recommended for most species to effectively break seed dormancy, but it is labour intensive and demands great care as not to damage the seed embryo.
• Treat dehulled seeds with a fungicidal suspension and wash thoroughly.
• Germinate on moist filter paper in petri dishes and place inside a germinator with 30°C and 100% RH.

Chemical treatment

• For some species, chemical treatment and/or dry heat method are more applicable and efficient when handling a large number of samples.

Method of regeneration

Sowing method

• Plant the germinated seeds 1-2 cm apart, in a seed box containing moist, fine, clean (preferably sterilized) soil mixed well with appropriate amount of ammonium sulfate.
• Apply a granular insecticide (e.g. Furadan) 3-4 days after planting to protect the seedlings from ants and other insects.
• Water the seedlings carefully with a fine spray, and grown them under partial shade until a week before transplanting.

Transplanting

• Transplant the seedlings 30 days after sowing to water-tight pots with good quality soil mixed with about 5 g of complete fertilizer.
• Maintain the water level to at least 1-2 cm depth.
• A granular insecticide (e.g. Carbofuran) should be applied 7 and 14 days after transplant to protect the plants against hoppers and defoliators.

Planting layout, density and distance 

• Use 5-10 pots for highly heterogeneos populations with low seed-set samples.
• Otherwise, 3-4 pots are enough to produce seeds for storage.
• Pots should be laid out at least 100 cm apart to provide sufficient ventilation between plants and enough space for plant management, but preventing from constant humid conditions that are conducive to disease development.
• When pure lines are to be developed, only one plant per pot should be maintained and spaced widely, preferably alternating species of diferent complexes.
• If a bulk population is required, 2-3 seedlings per pot should be transplanted and all plants maintained.  

Planting conditions 

• For species of the O. meyeriana complex, the seedlings should be transplanted into pots with light soil and good internal drainage to prevent water logging as they thrive best in mesophytic conditions.
• For the highly stoloniferous species, such as O. schlechteri and some related genera like Luziola, Leersia, and Hygroryza, a modified flat bed should be constructed and used for growing and maintaining a single accession.
• All species of the genus Oryza grow well under full sunlight except members of the O. meyeriana complex and O. ridleyi complexes which are best maintained in partial shade.
• Accessions difficult to germinate should be cultured on agar, and seedlings raised in culture solution in the Phytoron facility, where growth environment can be modified, before transfer and reared in the screen house.
• For the highly photo-sensitive species like O.schlechteri, continued modifications of conditions for flower induction may be needed. 

Different varieties of rice being grown inside an IRRI green house (photo: IRRI)

Crop management

Fertilization

Irrigation

Pest and disease control

• Plant health should be monitored closely and regularly, with seed health unit inspectors, as well as representatives from governmental health offices.
• Appropriate and intensive control measures should be applied to specific pest and diseases once symptoms appear.
• Spray liquid insecticides (emulsifiable concentrate and/or wettable powder) when need arises.
• Spraying soap detergent can help to control some small sucking insect pests.
• Maintaining the cleanliness of plants also helps preventing the spread of diseases.
• Infected/diseased plants should be rouged and eliminated.

 Thinning

• When purelines are to be developed, only one plant per pot should be maintained and spaced widely, preferably alternating species of different complexes.
• If a bulk population of seeds is required, 2-3 seedlings per pot should be transplanted and all the plants should be maintained.

Harvesting

Panicle bagging

• At the late vegetative stage, (about 60 days after transplant) the tillers should be tied loosely with for example an abaca twine to a bamboo stake (5 cm x 2 m) to prevent plants from encroaching from one pot to another, at the late reproductive stage, to facilitate panicle bagging.
• Panicle bagging is necessary for handling wild rices to minimize outcrossing, to prevent seed loss due to shattering and to prevent mixtures at harvesting.
• Panicles should be bagged a week after full panicle emergence using nylon net bags, which provide ample ventilation to facilitate anther dehiscence and prevent mold formation on glumes.
• For species with shorter panicles, glassine bags are a good substitute.
• The net bag should be pinned to the bamboo pole.
• Prior to bagging, labels should be prepared using shipping tags written with plot number and date of bagging with indelible ink.
• The labels must be attached inside the net bags.

Rice being grown inside an IRRI screen house. Notice the bagged panicles (photo: IRRI)

Panicle harvesting

• The panicles should be harvested 30 days after bagging or when most of the seeds have shattered.
• If sufficient seeds are obtained, the plants should be discarded and disposed through burning.
• However, for species with low seed set like O. rufipogon and O. longistaminata, the plants should be ratooned by cutting about 20-25 cm from the culms base, a little amount of ammonium sulfate should be applied and plants should be maintained until the next flowering to maximize seed production.

Post harvest management

Seed processing

• After harvesting, the panicles should be dried slowly to 6% moisture content and kept inside a drying room (15^oC and 15% RH) for about 2-4 weeks.
• Seeds should be authenticated and cross-referenced against the seedfile before carefully hand threshing and cleaning.
• A 20 grain sample should be taken for seed viability testing.

Disposal of contaminated material

To ensure plants do not spread by seeds or rhizomes, specific measures should be followed:

• Carry out the seed multiplication of all wild rices inside the screen house in pots.
• Quarantine measures should be strictly followed to further minimize dissemination of seeds or rhizomes.
• Designate a disposal area (a pit about 3-4 m deep from the surface ground) for burying discarded and burnt samples to properly control spread of seeds or rhizomes.
• Provide a modified incinerator or burning facility to accommodate burning activities especially during the rainy season.
• Cover all drainage canals inside the screen house with fine-mesh screens to further control dissemination of seeds through water.
• Waste material from the canals should be regularly hauled, burned and buried.
• If sufficient seeds are obtained, old plants should be discarded, burned and buried into the pit.
• Excess planting material (seeds, seedlings, rattooned tillers) should be collected, burned and buried after seeding, transplanting and/or replanting.
• Discarded soil used in growing should be treated with herbicide and buried in the designated area.
• Before filling up all the discarded material, the disposal area should be treated with a non-selective herbicide (e.g. glyphosate).
• Spray with herbicides to kill persistent species.
• Screen house staff should be advised to change their working clothes to minimize dispersal of seeds when they leave.
• Hand threshing and seed cleaning should be done in a specified room in the Seed Processing Area of the genebank.
• All dried leaves/straws, unfilled grains, mixtures and off-types must be collected, burned and buried.
• The access to screen houses should be regulated depending on the nature/importance of the visit.

Recording information

Consult the general rice characterization page for information about descriptors, or recording of information during characterization.

References and further reading

Borromeo TH, Sanchez PL, Vaughan DA. 1994. Wild rices of the Philippines. Philippine Rice Research Institute, Maligaya, Nueva Ecija, Philippines.

Chang TT, Vaughan DA.1989. Conservation and potentials of rice genetic resources. In: Bajaj YFS, editor. Biotechnology in agriculture and forestry. Springer Verlag, Berlin.

Hanson J. 1985. Practical Manuals for Genebanks: Procedures for handling seeds in genebanks. IBPGR, Rome, Italy. HTML version available from: http://www2.bioversityinternational.org/publications/Web_version/188/. Date accessed: 10 June 2010.

Lu BR. 1999. Taxonomy of the genus Oryza (Poaceae): Historical perspective and current status. IRRN 24.3. IRRI, Los Baños, Laguna.

Manual of operations and procedures of the International Rice Genebank. 2000. Genetic Resources Center, IRRI. Available here.

Naredo MEB, Juliano AB, Lu BR, de Guzman FC, Jackson MT. 1998. Responses to seed dormancy breaking treatments in rice species (Oryza L.). Seed Science and Technology 26:675-689.

Rao NK, Hanson J, Dulloo ME, Ghosh K, Nowel D, Larinde M. 2006. Manual of seed handling in genebanks. Handbooks for Genebanks No. 8. Bioversity International, Rome, Italy. Available in English (1.5 MB),  Spanish (1.4 MB) and French (1.9 MB).

Reed BM, Engelmann F, Dulloo ME, Engels JMM. 2004. Technical guidelines for the management of field and in vitro germplasm collections. Handbook for Genebanks No. 7. IPGRI, Rome, Italy. Available here.

Sackville-Hamilton NRS, Chorlton KH. 1997. Regeneration of accessions in seed collections: a decision guide. Handbook for Genebanks No. 5. IPGRI, Rome, Italy. Available here.

Tateoka T. 1962a. Taxonomic studies of Oryza I. O. latifolia complex. Bot. Mag. Tokyo 75:418-427.

Tateoka T. 1962b. Taxonomic studies of Oryza II. Several species complexes. Bot. Mag. Tokyo 75:455-461.

Tateoka T. 1963. Taxonomic studies of Oryza III. Key to the species and their enumeration. Bot. Mag. Tokyo 76:166-173.

van Soest LJM.1990. Plant Genetic Resources: Safe for the future in genebanks. Impact of Science on Society 158:107-120.

Vaughan DA. 1989. The genus Oryza L. Current status of taxonomy. IRRI Research Paper Series 138, Manila, Philippines.

Vaughan DA, Sitch LA. 1991. Gene flow from the jungle to farmers. Bioscience Vol. 41(1):22-28.

Vaughan DA. 1992. The wild relatives of rice: A genetic resources handbook. IRRI, Los Baños, Philippines.

Vaughan DA, Chang TT. 1992. In situ conservation of rice genetic resources. Economic Botany 46(4):368-383.

Vaughan DA, Morishima H, Kadowaki K. 2003. Diversity in the Oryza genus. Current Opinion 6:139-146. 

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