Publications
Management strategies references
Publications on Management strategies
Genetic identity
Booklet of CGIAR Centre Policy Instruments, Guidelines and Statements on Genetic Resources, Biotechnology and Intellectual Property Rights. Statements on Genetic Resources, Biotechnology and Intellectual Property Rights, Version II - Rome, July 2003, 51 pp. Click here to open this publication (0.7 MB)
Guiding principles for CGIAR Centres' policies to address the possibility of unintentional presence of transgenes in ex situ collections. Click here to open this publication
Hernandez-Suarez CM, Montesinos-Lopez O, Crossa J, McLaren G. 2008. Probability models for detecting transgenic plants.. Seed research Science 18: 77–89.
Hirano R, Jatoi SA, Kawase M, Kikuchi A, Watanabe N. 2009. Consequences of ex situ Conservation on the Genetic Integrity of Germplasm Held at Different Gene Banks: A Case Study of Bread Wheat Collected in Pakistan. Crop Sci 49:2160-2166.
Safe Transfer of Germplasm (STOG)
For specific references on pests and diseases please check the STOG pages.
Ahmed KM, Ravinder Reddy Ch.1993. A Pictorial guide to the identification of seed borne fungi of sorghum, pearl millet, finger millet, chickpea, pigeonpea and groundnut. Information Bulletin No. 34. Patancheru, A.P. 502 324 India: International Crops Research Institute for the semi-Arid Tropics. 200 pp.
Chakrabarty SK, Anitha K, Girish AG, Sarath Babu B, Prasada Rao RDVJ, Varaprasad KS, Khetarpal RK, Thakur RP. 2005. Germplasm exchange and quarantine of ICRISAT mandate crops. Information Bulletin No. 69. Rajendranagar 500 030, Andhra Pradesh, India: National Bureau of Plant Genetic Resources; and Patancheru 502 324, Andhra Pradesh, India: International Crops Research Institute for the Semi Arid Tropics. 80pp.
CABI, Crop Protection Compendium, 2007 CD-ROM Edition, www.cabicompendium.org/cpc
Compendium of barley diseases, 1997, Second Edition, Edited by D.E. Mathre. APS Press. St Paul, MN. USA. ISBN 0-89054-180-9.
Compendium of Corn Diseases. 1999. Third Edition. Editor, Donald White. APS Press, St. Paul, MN. USA. ISBN 0-89054-234-1.
Compendium of Wheat Diseases and Pests. 2010. Edited by William W. Bockus, Robert L. Bowden, Robert M. Hunger, Wendell L.
Morrill, Timothy D. Murray, and Richard W. Smiley. APS Press, St. Paul, MN. USA. ISBN 978-89054-385-6.
Mew TW, Misra JK. 1994. A manual of Rice Seed Health Testing. IRRI, Manila, The Philippines, 114,pp.
Mew TW, Gonzales P. 2002. A handbook of Rice Seedborne Fungi. Los Baños (Philippines): IRRI, and Enfield N.H.(USA) Science Publishers Inc. 83 pp.
Policies
The Cartagena Protocol on Biosafety
The Agreement on Trade Related Aspects of Intellectual Property Rights (TRIPS)
IUCN explanatory guide to the Treaty (http://data.iucn.org/dbtw-wpd/edocs/EPLP-057.pdf) (2 MB)
Risk management
Alconero R,
Benson EE. 2008. Cryopreservation of phytodiversity: A critical appraisal of theory & practice. Critical Reviews in Plant Sciences, 27: 3, 141-219.
Calles T, Dulloo ME, Engels JMM,
CIAT Risk Management Team. 2004. Risk Management at the CIAT genebank operations.
CIP Risk Management Team. 2004. Genetic Resources Risk Management in CIP.
Clark RL, Shands HL, Bretting PK, Eberhardt SA. 1997. Managing large diverse germplasm collections. Crop Science 37: 1-6.
Clement SL, Griswold TL, Rust RW, Hellier BC, Stout DM. 2006. Bee associates of flowering Astragalus and Onobrychis genebank accessions at a Snake River site in
Ellis D,
Fitzsimon J. 2006.
Fitzsimon J. 2007. Conservation and Use of Genetic Resources: Risk Management. Paper presented at the GPG2/GCP Quality Management and Performance Management System Design Workshop, October 2007,
GRC Risk Management Team. 2007. Risk Matrix at the IRRI Genetic
ICARDA Risk Management Team. 2005. Risk Analysis of Genetic Resources in ICARDA.
ICRISAT Risk Management Team. 2007. Risk Management at ICRISAT.
IITA Risk Management Committee. 2008. Risk Assessment Report at IITA. (0.1 MB)
INIBAP Risk Management Team. 2008. Risk Assessment Report at INIBAP Musa Genebank.
Panis B, Thinh NT. 2001. Cryopreservation of Musa germplasm. In: Escalant, Sharrock S, editors. JVINIBAP Technical Guideline 5. International Network for the Improvement of Banana and Plantain.
Rao NK, Hanson J, Dulloo ME, Ghosh K, Nowell D, Larinde M. 2006. Manual of genebanks. Handbooks for Genebanks No. 8. Bioversity International,
Reed BM, Engelmann F, Dulloo ME, Engels JMM. 2004. Technical guidelines for the management of field and in vitro germplasm collections. IPGRI Handbooks for Genebanks No. 7. International Plant Genetic Resources Institute,
USDA Forage and Turf Grass Crop Germplasm Committee. 1997. Crop vulnerability statement for forage and turf. (Can be obtained from Blair L. Waldron [
USDA Maize Crop Germplasm Committee. 2000. Maize report and vulnerability statement. http://www.ars-grin.gov/npgs/cgc_reports/maize00.htm
USDA Potato Germplasm Committee. 2004. Genetic vulnerability in potato. (Can be obtained from John Bamberg [
USDA Rice Germplasm Committee. 2004. Crop vulnerability statement for rice.
http://www.ars-grin.gov/npgs/cgc_reports/CropVulnerabilityRiceRevised.pdf
USDA Sorghum and Millet Crop Germplasm Committee. 2004. Sorghum and millet vulnerability statement. (Can be obtained from Gary C. Peterson [
USDA Sweetpotato Crop Germplasm Committee. 2001. Sweetpotato germplasm acquisition, maintenance and evaluation priorities 2001-2006. (Can be obtained from G. Craig Yencho [
USDA Vigna Crop Germplasm Committee. 2004. Vigna germplasm: Current status and future needs.
http://www.ars-grin.gov/npgs/cgc_reports/vignarpt2004.pdf
USDA Wheat Crop Germplasm Committee. 1996. Wheat vulnerability report.
http://www.ars-grin.gov/npgs/cgc_reports/1996_wheatcgc_report.pdf
Decision support tool
Altoveros NC, RV. Rao. 1998. Analysis of information on seed germplasm regeneration practices. In Regeneration of Seed Crops and their Wild Relatives: Proceedings of a Consultation Meeting, 4-7 December 1995, ICRISAT, Hyderabad, India, ed. J. M. M. Engels, and R. R. Rao. Rome: IPGRI.
Burstin J, Lefort M, Mitteau M, Sontot A, Guiard J. 1997. Towards the assessment of the costs of genebank management: conservation, regeneration, and characterization. Plant Varieties and Seeds 10: 163-172.
Calles T, Dulloo ME, Engelsn JMM, van den Houwe I. 2007. Best practices for germplasm management: A new approach for achieving genebank standards. Bioversity International.
Chakrabarty SK, Anitha K, Girish AG, Sarath Babu B, Rao PRDVJ; Varaprasad KS, Khetarpal RK, Thakur RP. 2005. Germplasm exchange and quaantine of ICRISAT mandate crops. Information Bulleting No. 69. Plant Quarentine Laboratory, ICRISAT, Patancheru.
Day-Rubenstein K, Heisey P, Shoemaker R, Sullivan J, Frisvold G. 2005. Crop genetic resources: An economic appraisal. A report from the economic research service. Economic Information Bulletin Number 2. United Stated Department of Agriculture.
De Boer L. 1992. Economies of scale and input substitution in public libraries. Journal of Urban Economics 32 (2): 257-268.
ECPGR. 2008. A strategic framework for the implementation of a European genebank integrated system (AEGIS). Discussion Paper.European Cooperative Programme for Plant Genetic Resources (ECPGR) .
Engels JMM, Rao RR. 1998. Regeneration of Seed Crops and their Wild Relatives. Rome: IPGRI.
Epperson J, Pachico DH, Guevara C. 1997. A costs analysis of maintaining cassava plant genetic resources. Crop Science 37: 1641 - 1649 (1991).
FAO. 2002. International Treaty on Plant Genetic Resources for Food and Agriculture: A global treaty for food security and sustainable agriculture. Food and Agriculture Organization of the United Nations: Rome.
Finch L, Christianson JB. 1981. Rural hospitals costs: an analysis with policy implications. Public Health Reports 96: 423-433.
Fowler C, Hodgkin T. 2004. Plant genetic resources for food and agriculture: Assessing global availability. Vol.2004. 29 ed.
Hardaker JB, Huirne RBM, Anderson JR. 1997. Coping with risk in agriculture. Wallingford: CAB International.
Johnson N, Pachico D, Voysest O. 2003. The distribution of benefits from public international banks: the case of beans in Latin America. Agricultural Economics 29 (2003) 277 - 286.
Koo B, Pardey PG, Wright BD. 2003. The economic costs of conserving genetic resources at the CGIAR centres. Agricultural Economics 29: 287-297.
Koo Bonwoo, Pardey PG, Wright BD, Bramel P, Debouck D, van Dusen ME, Jackson MT, Rao NK, Skovmand B, Taba S, Valkoun J. 2004. Saving seeds: The economics of conserving crop genetic resources ex-situ in the future harvest centres of the CGIAR. Oxfordshire: CABI Publishing.
Koo B, Wright BD. 2008. The optimal timing of evaluation genebank accessions and the effects of biotechnology. American Journal of Agricultural Economics 82 (4): 797-811.
Li D, Prtichard H. 2009. The science and economics of ex-situ plant conservation. Special issue: Plant science research in botanic gardens.
Liu LG. 2002. The cost functions and scale economies in academic research libraries. Library Trends 2002: 406-420.
Mafla G, Roa JC, Aranzales E, Debouck DG. Handbook of procedures for in-vitro germplasm conservation of the genus Maniot. Genetic Resources - CIAT: Cali.
Pardey PG, Koo B, van Dusen ME, Skovmand B, Taba S. 2001. Costing the Conservation of Genetic Resources: CIMMYT's Ex Situ Maize and Wheat Collection. Crop Science 41: 1286-1299.
Rao NK, Hanson J, Dulloo ME, Ghosh K, Nowell D, Larinde M. 2006. Manual of seed handling in genebanks. Handbook for Genebanks No. 8, Maccarese, Italy: Bioversity International.
Salcedo J, Debouck DG, Torres AM, Guevara C. 2006. Flow Chart of Operations for Bean and Tropical Forage Germplasm. Genetic Resources - CIAT: Cali.
Smale M, Drucker AG. 2007. Agricultural Development and the Diversity of Crop and Livestock Genetic Resources: A Review of the Economics Literature. In Biodiversity Economics, ed. A. Kontoleon, U. Pascual, and T. Swanson. Cambridge: Cambridge University Press.
Smale M, Koo B. 2003. Genetic Resources Policies: What is a Gene Bank Worth? IFPRI: Washington, D.C.: IFPRI, IPGRI, and the Systemwide Genetic Resources Program.
Taba S, van Ginkel M, Hoisington D, Poland D. 2004. Wellhausen-Anderson Plant Genetic Resources Center: Operations Manual, 2004. El Batan, Mexico: CIMMYT Click here to open this manual. (0.5 MB)
Upadhayaya H, Gowda CLL, Sastry DVSSR. 2008. Plant genetic resources management: collection, characterization, conservation and utilization. SAT eJournal (ejournal.icrisat.org) An Open Source Journal published by ICRISAT: December 2006, Volume 6.
Virchow D. 2003. Current expenditures on crop genetic resources activities. In Efficient conservation of crop genetic diversity, ed. D. Virchow. Berlin: Springer-Verlag.
Virchow D. 1999. Spending on conservation of plant genetic resources for food and agriculture: How much and How efficient? ZEF Discussion Papers on Development Policy. Bonn: Center for Development Research.
Procedures references
Publications on Procedures
A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - Q - R - S - T - U - V - W - X - Y - Z |
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APG III. 2009. An update of the angiosperm phylogeny group classification for the orders and families of flowering plants: APG III. Botanical Journal of the Linnean Society 161(2):105–121. Available online (accessed 6 October 2011): http://onlinelibrary.wiley.com/doi/10.1111/j.1095-8339.2009.00996.x/pdf.
Arai-Kichise Y, Shiwa Y, Nagasaki H, Ebana K, Yoshikawa H, Yano M, Wakasa K. 2011. Discovery of genome-wide DNA polymorphisms in a landrace cultivar of japonica rice by whole-genome sequencing. Plant Cell Physiology 52(2):274–282.
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Benson EE, Harding K, Debouck D, Dumet D, Escobar R, Mafla G, Panis B, Panta A, Tay D, Van den houwe I, Roux N. 2011. Refinement and standardization of storage procedures for clonal crops - Global Public Goods Phase 2: Part I. Project landscape and general status of clonal crop in vitro conservation technologies. System-wide Genetic Resources Programme, Rome, Italy. Available here (2.5 MB).
Benson EE, Harding K, Debouck D, Dumet D, Escobar R, Mafla G, Panis B, Panta A, Tay D, Van den houwe I, Roux N. 2011. Refinement and standardization of storage procedures for clonal crops - Global Public Goods Phase 2: Part II. Status of in vitro conservation technologies for: Andean root and tuber crops, cassava, Musa, potato, sweet potato and yam. System-wide Genetic Resources Programme, Rome, Italy. Available here (9 MB).
Benson EE, Harding K, Debouck D, Dumet D, Escobar R, Mafla G, Panis B, Panta A, Tay D, Van den houwe I, Roux N. 2011. Refinement and standardization of storage procedures for clonal crops - Global Public Goods Phase 2: Part III. Multi-crop guidelines for developing in vitro conservation best practices for clonal crops. System-wide Genetic Resources Programme, Rome, Italy. Available here (4.5 MB).
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Brenes Hines A, Tapia VG, Velasco Urquizo E. 2002. Citrus. IPGRI Technical Bulletin 7:56–60. Background and methods for in vitro collection of Citrus germplasm.
Bressan EA, Veasey EA, Peroni N, Felipim AP, Santos KMP. 2005. Collecting yam (Dioscorea spp.) and sweet potato (Ipomoea batatas) germplasm in traditional agriculture small-holdings in the Vale do Ribeira, São Paulo, Brazil. Plant Genetic Resources Newsletter 144:8–13.
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Brickell CD, Alexander C, David JC, Hetterscheid WLA, Leslie AC, Malecot V, Xiaobai Jin, Cubey JJ, editors. 2009. New Edition of the International Code of Nomenclature for Cultivated Plants. Scripta Horticulturae 10. International Society for Horticultural Science, Leuven, Belgium.
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Brown AHD. 2008. Thematic background study on “Indicators of genetic diversity, genetic erosion and genetic vulnerability for plant genetic resources for food and agriculture”. A report submitted to FAO. Food and Agriculture Organization of the United Nations, Rome.
Brown AHD, Briggs JD. 1991. Sampling strategies for genetic variation in ex situ collections of endangered plant species. In: Falk D.A., Holsinger K.E., editors. Genetics and Conservation of Rare Plants. Oxford University Press, New York. pp. 99–119.
Brown AHD, Brubaker CL. 2002. Indicators of sustainable management of plant genetic resources: How well are we doing? In: Engels JMM, Ramanatha Rao V, Brown AHD, Jackson MT, editors. Managing Plant Genetic Diversity. CABI Publishing, Oxon, UK. pp. 249–262.
Brown AHD, Hardner CM. 2000. Sampling the gene pools of forest trees and ex situ conservation. In: Young A, Boyle TJB, Boshier D, editors. Forest Conservation Genetics Principles and Practices. CSIRO Publishing, Collingwood, Australia. pp. 185–196.
Brown AHD, Briggs JD. 1991. Sampling strategies for genetic variation in ex situ collections of endangered plant species. In: Falk DA, Holsinger KE, editors. Genetics and Conservation of Rare Plants. Oxford University Press, New York. pp.99–119.
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